FastQCFastQC Report
Wed 31 May 2023
EGAF00007951606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412545
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19200.4654037741337309No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18800.4557078621726115No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13540.3282066198838915No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13300.32238907270721984No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13050.3163291277315202No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11500.27875746888218256No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9970.2416706056309009No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9960.24142820783187288No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7530.18252554266807258No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6660.16143693415263788No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6630.16070974075555394No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6160.14931704420123865No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6160.14931704420123865No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5850.14180271243137113No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5480.1328339938673357No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5260.12750124228872No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5130.1243500709013562No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4990.12095650171496443No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4850.11756293252857264No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4770.11562375013634876No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4520.10956380516064913No Hit
TTCTTTATCTGGAGCGTGAACACCGTCGACGCTCGGCTGCAGGG4500.10907900956259317No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4480.1085942139645372No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4370.10592783817522937No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4280.1037462579839775No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4230.10253426898883758No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)