FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412545
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29430.7133767225393594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19460.4717061169084585No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT18800.4557078621726115No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16260.3941388212195033No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14080.3412961010314026No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13820.33499375825667504No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13470.32650983529069555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10740.2603352361560557No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9800.23754984304742516No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8330.20191736659031134No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8210.19900859300197557No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7190.17428401750112107No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7090.17186003951084125No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6580.159497751760414No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6380.15464979577985433No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5680.1376819498478954No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5620.13622756305372746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5120.12410767310232823No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5060.12265328630816032No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4940.1197445127198245No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4940.1197445127198245No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4910.11901731932274055No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4840.11732053472954466No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4810.1165933413324607No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC4500.10907900956259317No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4460.10810941836648125No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4260.10326146238592154No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4240.10277666678786557No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4240.10277666678786557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)