FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416610
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42711.0251794244017187No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6520.15650128417464776No Hit
TTCGATGCACTGCCGAAAAAGAAATCCCGTA5590.1341782482417609No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5530.132738052375123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5360.12865749741964908No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4320.10369410239792613No Hit
TTCGACGCCCTGCCGAAGAAAAAATCTCGCA4310.10345406975348648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)