FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451968
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26590.5883159869725291No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24280.537206173888417No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC22510.49804410931747384No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12260.2712581421693571No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11980.2650630133106769No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10480.23187482299631834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10000.22125460209572362No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9720.21505947323704333No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9400.2079793259699802No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7290.1612946049277825No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6920.15310818465024073No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6650.14713431039365618No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6210.13739910790144433No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5940.1314252336448598No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5660.12523010478617957No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5180.11460988388558482No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5160.11416737468139337No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4960.1097422826394789No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4910.10863600962900029No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.10044958935145851No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4540.10044958935145851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)