FastQCFastQC Report
Sun 21 May 2023
EGAF00007951618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences390467
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4860.12446634414688053No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4840.12395413696932135No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4420.11319778624057858No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4030.10320974627817459No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA3980.10192922833427666No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT3950.10116091756793787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)