FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445271
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19720.44287636068821007No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13190.2962240972351669No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12010.26972338194043627No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11820.2654563176133186No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10880.2443455783107366No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10780.24209975498067468No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10130.2275019033352722No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10060.22592982700422887No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9870.22166276267711124No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9400.21110739302582024No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9270.20818782269673972No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8860.19897994704348587No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8210.18438209539808342No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8120.1823608544010277No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7760.17427589041280478No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6980.15675846843832184No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6910.15518639210727847No Hit
GAAATCCGGCAGGTCGGTGGAGCAGCTGAAAACGTAGCCACCAG6900.1549618097742723No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6900.1549618097742723No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6620.14867350445009894No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6420.14418185778997508No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6260.14058854046187602No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6250.14036395812886984No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6080.13654605846776458No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5820.13070691780960358No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5510.12374486548641164No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5460.12262195382138068No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5440.1221727891553683No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5410.12149904215634973No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5170.11610906616420112No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4950.11116825483806492No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4920.11049450783904634No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT4920.11049450783904634No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG4590.10308329084984201No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4580.10285870851683582No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4510.10128663218579247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)