FastQCFastQC Report
Wed 31 May 2023
EGAF00007951621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445271
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25920.5821174071520491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20000.44916466601238353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16790.37707373711739595No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13750.3088007078835136No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13750.3088007078835136No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13340.2995928322302598No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11630.261189253286201No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11190.2513076306339285No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11110.24951097196987904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10870.24412099597773043No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10830.24322266664570566No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10710.24052767864963134No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9740.21874319234803075No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9460.2124548870238574No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9410.21133197535882642No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8990.20189951737256637No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8230.18483126006409578No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7840.17607254907685432No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7670.17225464941574906No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.1657417617585695No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7210.16192386209746423No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7070.15877970943537756No Hit
TCTAGCTCTAGCGGCTTTTCTGCCATCGCAG6900.1549618097742723No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6740.15136849244617323No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6380.14328352845795034No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6120.13744438779978935No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5800.1302577531435912No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5660.12711360048150452No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5580.12531694181745498No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5500.12352028315340546No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5490.12329570082039926No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5430.12194820682236213No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5260.11813030716125686No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5230.11745656016223828No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5190.11655823083021352No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5160.11588448383119494No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4910.11026992550604013No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4690.10532911417990394No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4650.10443078484787915No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4470.10038830285376771No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4470.10038830285376771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)