FastQCFastQC Report
Wed 31 May 2023
EGAF00007953460

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953460
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21150234
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA578739127.36324808510393No Hit
GGTCGAGC525829124.861620916345416No Hit
AAGTTGAT517546724.470022412045182No Hit
TTAGATTG462635721.87378636094523No Hit
CCCACCAA421700.19938313684850958No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)