FastQCFastQC Report
Wed 31 May 2023
EGAF00007953464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20851349
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA573767527.51704458066478No Hit
GGTCGAGC519394624.909400346231795No Hit
AAGTTGAT512259724.567221046465626No Hit
TTAGATTG456095721.873678292948817No Hit
CCCACCAA415120.19908544046718513No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)