FastQCFastQC Report
Wed 31 May 2023
EGAF00007953472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21958632
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC608506927.711512265427103No Hit
TCATCCTT585370826.65789016364954No Hit
ATTGGACG530651124.1659453102543No Hit
GGCAAGGA444314220.234147555275754No Hit
TCATCCTA551600.25119961935698No Hit
CAGCTTAA252920.11518021705541584No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)