FastQCFastQC Report
Wed 31 May 2023
EGAF00007953480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22287343
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC617629727.71212791044675No Hit
TCATCCTT595161326.704004151594024No Hit
ATTGGACG538738724.17240583590426No Hit
GGCAAGGA450111020.19581248424274No Hit
TCATCCTA566310.25409489143681235No Hit
CAGCTTAA260720.11698119421413311No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)