FastQCFastQC Report
Wed 31 May 2023
EGAF00007953484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22350370
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC615554427.541127954481293No Hit
TCATCCTT594191926.58532722277081No Hit
ATTGGACG540331124.175487922571303No Hit
GGCAAGGA453894220.30812912716881No Hit
TCATCCTA576230.2578167609753217No Hit
CAGCTTAA275450.12324180763003027No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)