FastQCFastQC Report
Wed 31 May 2023
EGAF00007953486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22350370
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG700580.3134534238135655No Hit
CAATCAGACTATTGCG365660.16360355555635098No Hit
CTCTGCAACCCTCCTA303900.13597090338996626No Hit
TGGGAGTGAGCGCAAA290370.12991731233084733No Hit
CATTGCGCTCGTGCAC277570.12419033778859141No Hit
CCGTTCTGAAATGCTC267390.11963560334795353No Hit
TGGCTAATGCTTGTGA249400.1115865195967673No Hit
GAGAGAAGACCAGAGA238750.10682149780965595No Hit
ATCCCGACTCGTTCTC235930.1055597737308152No Hit
GGGAGCTCTAGTGGTG234270.10481705671986638No Hit
CCTAACGCTTCGTCCT226590.10138087199451284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)