FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953488

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953488
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15974684
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA436202327.30584842867627No Hit
CCTCTAAC400839625.092177097212065No Hit
AGGGACTG378243723.677695283362098No Hit
GACAGGCT365182822.860095385924378No Hit
TTATCTAA181530.11363605064112692No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)