FastQCFastQC Report
Wed 31 May 2023
EGAF00007953492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16443430
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA447953827.242114327728462No Hit
CCTCTAAC410306224.95259200787184No Hit
AGGGACTG389228923.670785231548404No Hit
GACAGGCT374576122.77968161143995No Hit
TTATCTAA188610.1147023461650033No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)