FastQCFastQC Report
Wed 31 May 2023
EGAF00007953496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16240235
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA443593327.314463121993No Hit
CCTCTAAC407454425.08919359849165No Hit
AGGGACTG384666223.68599961761637No Hit
GACAGGCT371234722.858948777526926No Hit
TTATCTAA184230.11344047669260944No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)