FastQCFastQC Report
Wed 31 May 2023
EGAF00007953500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16274478
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATCTGA443479127.249973854768182No Hit
CCTCTAAC405314924.904940115437192No Hit
AGGGACTG386583423.753966179437523No Hit
GACAGGCT372122222.865384683920432No Hit
TTATCTAA186370.1145167298146214No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)