FastQCFastQC Report
Wed 31 May 2023
EGAF00007953504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18130983
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT530006429.23208300399377No Hit
TCATGCGA463941525.588325795683552No Hit
GGGACTAC409511222.586265730876256No Hit
CATCAGTG389606321.488426744429688No Hit
ATCGTACA204060.1125476759864592No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)