FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18620979
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT542195229.11743791773784No Hit
TCATGCGA476507125.58979847407593No Hit
GGGACTAC418354122.466815520279575No Hit
CATCAGTG398974621.426080766215353No Hit
ATCGTACA217690.11690577600672876No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)