FastQCFastQC Report
Wed 31 May 2023
EGAF00007953516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18495096
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT538825029.133398388416044No Hit
TCATGCGA474172325.637731212641445No Hit
GGGACTAC416035322.494357423178553No Hit
CATCAGTG397010821.465733403059925No Hit
ATCGTACA217320.1175014176730956No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)