FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28885365
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT820081328.390892758322423No Hit
TTTATCCC784361527.154287300852868No Hit
CAGGAAGA715130424.757533789169706No Hit
AGCTCGAG516903317.894989383031856No Hit
TTTATCCA715000.24753019392346262No Hit
GCACGTTA609040.2108472577722317No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)