FastQCFastQC Report
Wed 31 May 2023
EGAF00007953532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27854816
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT788161028.29532243185523No Hit
TTTATCCC758180227.218998682310446No Hit
CAGGAAGA686324324.6393406440021No Hit
AGCTCGAG497199017.849660180846286No Hit
TTTATCCA717100.2574420164900748No Hit
GCACGTTA610080.21902137138511343No Hit
CAGGAAGC281950.10122127534427082No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)