FastQCFastQC Report
Wed 31 May 2023
EGAF00007953538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30469951
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG2827040.9278124536531089No Hit
CTCTCTTTGATGAATG619660.2033675735152971No Hit
TTTAGTCTGAACGTTC538890.17685949019084407No Hit
TATAGCCGAATAACCC520930.17096515842772442No Hit
ATCCCGACTACCGTTA486740.15974426739314415No Hit
AAACGCTACCGGTTGC455250.14940949527618208No Hit
GTAATCTCTTTGTTTC444800.1459798868728079No Hit
ATTGTGCGACGTAGAG422770.1387498128894267No Hit
ATTGAGAGATGTCACA407310.13367596160558315No Hit
GGAACATCTTCTGGGC372560.12227128294364505No Hit
CTAAGTCGACCTAACA355940.11681672871741737No Hit
GAACGCGCTAGTAGGC354730.11641961616544773No Hit
ACACACTGATTAGAAG354460.11633100427368591No Hit
GTTCTCGACTTGGCGC350430.1150083897410928No Hit
TCGGGTGACAACGTTC350290.11496244283425332No Hit
AGTACAAGACCGTTAA338020.11093552464196611No Hit
GCAGTATTGTTGACAC337540.1107779923899451No Hit
AAGACAAACGTCAATC318140.10441106387076236No Hit
AGCCCAGTGCGACACC305780.10035460838122123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)