FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29571424
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGT979678033.129212850892806Illumina Paired End PCR Primer 2 (100% over 8bp)
CATCGTCG968612832.75502728580132No Hit
GTCATATA932217331.524261395054904No Hit
TCGGACAC2264170.7656614710201307No Hit
CATCGTCA413690.13989519070843529No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)