FastQCFastQC Report
Wed 31 May 2023
EGAF00007953552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26216563
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT720052327.465549164472858No Hit
ATCTGATC678283925.87234261028038Illumina PCR Primer Index 9 (100% over 8bp)
CGTGCTAA593466422.63707870478674No Hit
GAGAAGGG586714222.379523967348426No Hit
TCACTCCA378630.14442396587226175No Hit
ATCTGATA316920.1208854112569981No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)