FastQCFastQC Report
Wed 31 May 2023
EGAF00007953556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25408635
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCCT698147527.47678102345915No Hit
ATCTGATC655500525.798335880695678Illumina PCR Primer Index 9 (100% over 8bp)
CGTGCTAA573471022.569925539093305No Hit
GAGAAGGG565663322.26264024021755No Hit
TCACTCCA386110.1519601505551164No Hit
ATCTGATA327620.1289404173030153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)