FastQCFastQC Report
Wed 31 May 2023
EGAF00007953568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25724345
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACA767469129.834349523768246No Hit
CGACTCTT706764827.47454988649857No Hit
TAGACGAC612170523.797321175718956No Hit
GTTTGTGG434713416.898910351264533No Hit
CGACTCTA678960.2639367494099461No Hit
GTTTGTGA453390.1762493855528683No Hit
TAGACGCC285150.11084830342619025No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)