FastQCFastQC Report
Wed 31 May 2023
EGAF00007953572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24704517
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACA735058829.754024334901995No Hit
CGACTCTT677978027.44348331116937No Hit
TAGACGAC587677223.78824892629959No Hit
GTTTGTGG414007616.758376615903884No Hit
CGACTCTA664300.26889819379994356No Hit
GTTTGTGA432050.1748870459600566No Hit
TAGACGCC316860.12825994533712196No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)