FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24584285
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGAACA731386929.750179840495665No Hit
CGACTCTT674491827.43589248172156No Hit
TAGACGAC586295523.8483852591198No Hit
GTTTGTGG411638416.743964691265173No Hit
CGACTCTA668390.27187693276416214No Hit
GTTTGTGA431640.17557557602346377No Hit
TAGACGCC309370.12584055220641968No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)