FastQCFastQC Report
Wed 31 May 2023
EGAF00007953584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32612966
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG963685029.549136990484094No Hit
CAACCATC913507128.01054954645953No Hit
AGCTGCGT891975627.350336672843557No Hit
GTGGAGCA430028413.185810821376995No Hit
CAACCATA520990.1597493463182711No Hit
TCTATTAA343370.10528634531431456No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)