FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31594029
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG929694729.42627861739318No Hit
CAACCATC887742428.09842328118392No Hit
AGCTGCGT861242327.259654031462716No Hit
GTGGAGCA413162013.077217850246322No Hit
CAACCATA531360.16818367799814327No Hit
TCTATTAA336570.10652962304997568No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)