FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32229084
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG953209429.57606241617044No Hit
CAACCATC899910727.922316997901646No Hit
AGCTGCGT883116027.401213140280372No Hit
GTGGAGCA424902213.183812484400736No Hit
CAACCATA520100.16137597953450988No Hit
TCTATTAA340860.10576161581259957No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)