FastQCFastQC Report
Wed 31 May 2023
EGAF00007953602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40318754
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG4083331.0127619519194468No Hit
TCCTTAATGTCGGGCT1519630.37690400849192907No Hit
TCAATGGACGCTTCGG1509910.3744932197061447No Hit
AGGAACCGACCCGCAA1262520.31313467673132955No Hit
GTTAATCCTTCGTACA1190050.29516041095912837No Hit
TCTAGTGGAATCAGGG1159130.28749152317554255No Hit
GGACCTCGAGGTGCAA1102370.27341370717954233No Hit
ACCTACCTGCACAGTT1084480.2689765660913033No Hit
TTCCGTCGATAGGAGC976530.24220242520391377No Hit
ATCGTTTACATGAATG936100.23217483357744637No Hit
TACCTTCCTCCCGAGT933230.23146300602444211No Hit
GTTGATGACATCCTCC911870.22616522326061964No Hit
TAAGCTGACTACACTG898950.22296075915441238No Hit
TGGTCCTTGTACGATC881490.21863026818735518No Hit
TGTTGTACTCGGCACT830770.20605051435865304No Hit
CTGTTGCTGCGGAATG774560.19210911130835046No Hit
TCCTTCACTAACGCAG771240.19128567316341175No Hit
CACAGCTCTATCCTAG737180.18283799147166105No Hit
ACGTCCACTTTCCATT708970.1758412474750584No Hit
CCTTCAGTGCCCGCAA642250.15929311704424198No Hit
CTGGCCAGAACAACAA625790.15521064961481695No Hit
TAAGGGCGAAGGACCA624570.15490806089890574No Hit
CACTATACTCCATGTA608490.15091984241378095No Hit
TTTCGGCTGTGGTCCG607380.15064453628700927No Hit
TACTGTTTGAAAGTAC599970.1488066818731551No Hit
CTCGGTTTGCCAGCAC582780.1445431572612586No Hit
TAACTCACTTGAGGCA576550.14299797062181038No Hit
TCGCGGTGAACCGTGC552730.1370900499554128No Hit
CCAGCACGAACAGGCA535900.1329158138170639No Hit
AGTTTGCGACCTACGG529980.1314475144742816No Hit
TACCTTCCTCATTCAG529460.1313185422347129No Hit
CGGTTCACTTGACTCA524740.1301478711370892No Hit
GGGTTCTCTCGGAAGT523480.1298353614796727No Hit
GATACCATGGCTCTTC517580.1283720226076431No Hit
GCTACTGCTTCGACAT503690.12492697566993266No Hit
TCGGACCGAGGCCTGT493770.12246658217662182No Hit
TAAGGCTTGTTCGTTT469670.11648921491968725No Hit
CGCATCTTGGGATGGT469230.11638008456312911No Hit
CGCTTCCCTCATCCTC462630.11474312921475698No Hit
TCCGACACTACGCCAC458550.11373119318121784No Hit
TAATGGGCTATCACAC451370.11195038418101907No Hit
GCTTCTGTGCCAGGCT440100.10915515891190487No Hit
GGGTAGAACCCATGTA439010.10888481325588584No Hit
ATGGCCGTGTAATAGG434230.10769926074600421No Hit
CGAGAGATGGTTTACG426200.10570763173881811No Hit
GCAGTCGACTCCGTAA413090.10245604316046077No Hit
GAAGAATACGGACACA407460.10105967064359181No Hit
TACGTTTACCGAGGTA404740.10038504662123239No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)