FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39047128
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATTCCG985101925.228536654475587No Hit
GACACAAT954638024.448353794419912No Hit
TGTGATGC952952424.40518544667357No Hit
CTGCGGTA932096023.871051412539227No Hit
GACACAAA540780.13849418067315988No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)