FastQCFastQC Report
Wed 31 May 2023
EGAF00007953606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39047128
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3100540.7940507173792654No Hit
TCCTTAATGTCGGGCT1470500.37659619934147265No Hit
TCAATGGACGCTTCGG1459340.3737381146188268No Hit
AGGAACCGACCCGCAA1232480.3156390913052555No Hit
GTTAATCCTTCGTACA1162790.29779142783561446No Hit
TCTAGTGGAATCAGGG1121090.2871120252429321No Hit
GGACCTCGAGGTGCAA1086010.2781280098244357No Hit
ACCTACCTGCACAGTT1067480.27338246234140445No Hit
TTCCGTCGATAGGAGC947390.24262731947916885No Hit
ATCGTTTACATGAATG922050.23613772567344773No Hit
TACCTTCCTCCCGAGT909970.23304402823173062No Hit
GTTGATGACATCCTCC884510.2265237023322176No Hit
TAAGCTGACTACACTG871000.2230637807728138No Hit
TGGTCCTTGTACGATC862590.2209099731995654No Hit
TGTTGTACTCGGCACT811040.20770797790813195No Hit
CTGTTGCTGCGGAATG757010.1938708526783327No Hit
TCCTTCACTAACGCAG746320.19113313532303836No Hit
CACAGCTCTATCCTAG729140.18673332389516586No Hit
ACGTCCACTTTCCATT696870.17846895167296298No Hit
CCTTCAGTGCCCGCAA625860.16028323517161108No Hit
CTGGCCAGAACAACAA617420.1581217445749147No Hit
TAAGGGCGAAGGACCA608460.1558270815717868No Hit
CACTATACTCCATGTA593230.15192666666803253No Hit
TTTCGGCTGTGGTCCG588140.15062311368969314No Hit
TACTGTTTGAAAGTAC583090.14932980474261767No Hit
CTCGGTTTGCCAGCAC582170.14909419202354654No Hit
TAACTCACTTGAGGCA558400.14300667644493598No Hit
TCGCGGTGAACCGTGC536530.1374057523513637No Hit
CGGTTCACTTGACTCA520000.13317240643153064No Hit
GATACCATGGCTCTTC516870.13237081098512546No Hit
AGTTTGCGACCTACGG516550.13228885873501375No Hit
CCAGCACGAACAGGCA516450.13226324865685385No Hit
GGGTTCTCTCGGAAGT515930.1321300762504223No Hit
TACCTTCCTCATTCAG512270.1311927473897696No Hit
GCTACTGCTTCGACAT495260.12683647309476898No Hit
TCGGACCGAGGCCTGT476780.12210373065081764No Hit
CGCATCTTGGGATGGT459770.11774745635581699No Hit
CGCTTCCCTCATCCTC459390.11765013805880935No Hit
TAAGGCTTGTTCGTTT458480.11741708634755417No Hit
TAATGGGCTATCACAC443010.11345520725621613No Hit
TCCGACACTACGCCAC439280.11249995134085149No Hit
GGGTAGAACCCATGTA434750.11133981480020759No Hit
GCTTCTGTGCCAGGCT433240.11095310261999296No Hit
ATGGCCGTGTAATAGG427140.10939088785223847No Hit
CGAGAGATGGTTTACG414870.10624853126201754No Hit
GCAGTCGACTCCGTAA407890.10446094780645583No Hit
GAAGAATACGGACACA398120.10195884317023265No Hit
TACGTTTACCGAGGTA394130.10093700105165224No Hit
CATTGGAACGGACCTC394040.10091395198130833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)