FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39879024
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACATTCCG1008267625.28315637815008No Hit
GACACAAT977404424.509235732549524No Hit
TGTGATGC973581024.413360768307673No Hit
CTGCGGTA958402524.032747140451583No Hit
GACACAAA515400.12924087610569407No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)