FastQCFastQC Report
Wed 31 May 2023
EGAF00007953614

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953614
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38702719
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3455120.8927331436326218No Hit
TCCTTAATGTCGGGCT1467900.3792756782798645No Hit
TCAATGGACGCTTCGG1463690.3781878994083077No Hit
AGGAACCGACCCGCAA1224740.3164480511046265No Hit
GTTAATCCTTCGTACA1152830.29786796116314207No Hit
TCTAGTGGAATCAGGG1127420.29130253096688113No Hit
ACCTACCTGCACAGTT1067750.2758850095260749No Hit
GGACCTCGAGGTGCAA1059380.2737223707719347No Hit
TTCCGTCGATAGGAGC938540.24249975822112135No Hit
ATCGTTTACATGAATG921570.23811505336356342No Hit
TACCTTCCTCCCGAGT908320.23469152128562337No Hit
GTTGATGACATCCTCC874440.22593761435727552No Hit
TAAGCTGACTACACTG871930.22528908111081292No Hit
TGGTCCTTGTACGATC866550.2238989978972795No Hit
TGTTGTACTCGGCACT809640.20919460464780265No Hit
CTGTTGCTGCGGAATG747020.19301486285756822No Hit
TCCTTCACTAACGCAG746880.1929786896884428No Hit
CACAGCTCTATCCTAG722230.186609628124577No Hit
ACGTCCACTTTCCATT696440.17994601361211857No Hit
CCTTCAGTGCCCGCAA620700.16037632911527483No Hit
CTGGCCAGAACAACAA615930.15914385756721638No Hit
TAAGGGCGAAGGACCA610780.15781320170296045No Hit
TTTCGGCTGTGGTCCG592150.152999586411487No Hit
CACTATACTCCATGTA591910.15293757526441487No Hit
TACTGTTTGAAAGTAC587380.1517671148634286No Hit
CTCGGTTTGCCAGCAC577670.14925824720480235No Hit
TAACTCACTTGAGGCA561140.14498722945020995No Hit
TCGCGGTGAACCGTGC537180.13879644993417645No Hit
TACCTTCCTCATTCAG520600.13451251319061072No Hit
CCAGCACGAACAGGCA519440.1342127926464288No Hit
CGGTTCACTTGACTCA518910.1340758513633112No Hit
GGGTTCTCTCGGAAGT513720.13273486030787657No Hit
AGTTTGCGACCTACGG507510.1311303218773854No Hit
GATACCATGGCTCTTC488700.12627019822560787No Hit
GCTACTGCTTCGACAT483270.12486719602310113No Hit
TCGGACCGAGGCCTGT469030.12118786796348857No Hit
CGCATCTTGGGATGGT461690.11929136038219951No Hit
CGCTTCCCTCATCCTC459860.11881852538577459No Hit
TAAGGCTTGTTCGTTT459430.11870742208060368No Hit
TAATGGGCTATCACAC442490.11433046861642976No Hit
TCCGACACTACGCCAC437940.11315484061985412No Hit
GGGTAGAACCCATGTA427470.11044960432883281No Hit
ATGGCCGTGTAATAGG426830.11028424126997383No Hit
GCTTCTGTGCCAGGCT426080.11009045643537345No Hit
CGAGAGATGGTTTACG414610.10712684036488496No Hit
GCAGTCGACTCCGTAA404230.10444485825401569No Hit
CATTGGAACGGACCTC394590.10195407717995214No Hit
GAAGAATACGGACACA388640.10041671749212244No Hit
TCGCCGAGAGGAATAT387530.1001299159369139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)