FastQCFastQC Report
Wed 31 May 2023
EGAF00007953616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39364870
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT1146942529.136194276775207No Hit
CCGTTGAA946835224.05279631305781No Hit
GGAAGCTC940689723.896679958551875No Hit
ATCCAAGG845243421.472023151607004No Hit
TATGCTCA541390.13753125566018637No Hit
CCGTTAAA427880.10869590068505243No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)