FastQCFastQC Report
Wed 31 May 2023
EGAF00007953618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39364870
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3501150.889409770691482No Hit
TGAGGTACTAGCCATT642790.16329026362845855No Hit
TGTGACTGACCTTTGC620680.1576735805300513No Hit
AGTGTGACTCTACTCC580700.14751731683605204No Hit
TGCAGATACTAATAGG540740.1373661338142359No Hit
TGTCTGCACATTAAGG507490.12891951630984683No Hit
TTCCCTGGAGGACCTC493880.1254621188892533No Hit
TGTTACTTGTTCTGAG492790.12518522225527484No Hit
GTTAATCCTGTCCCGA483710.12287859708415141No Hit
GTGCATAACTGGTGAG477590.12132391139612553No Hit
GTACTCAGACGAGGAT458550.11648711147782273No Hit
ACTCCGTACGAATAGT453500.11520424175159223No Hit
TCTTATGACGTGGTGA451910.11480032831303648No Hit
TAGGATAGAGGTATGG431340.1095748569727272No Hit
CAATAGAGATAACGAA413450.10503019570495215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)