FastQCFastQC Report
Wed 31 May 2023
EGAF00007953620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38504240
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT1120516929.10113016124977No Hit
CCGTTGAA922446023.956997982559844No Hit
GGAAGCTC917010923.81584209946749No Hit
ATCCAAGG823404721.384779961895106No Hit
TATGCTCA552570.1435088707113814No Hit
CCGTTAAA419710.10900357986549014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)