FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953622

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953622
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38504240
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3213720.8346405486772367No Hit
TGAGGTACTAGCCATT641370.1665712659177275No Hit
TGTGACTGACCTTTGC616800.16019015048732296No Hit
AGTGTGACTCTACTCC578800.1503211074936163No Hit
TGCAGATACTAATAGG535540.13908598118025445No Hit
TGTCTGCACATTAAGG502750.1305700359233165No Hit
TTCCCTGGAGGACCTC487630.12664319565845217No Hit
TGTTACTTGTTCTGAG487050.12649256289696925No Hit
GTTAATCCTGTCCCGA477120.12391362613571907No Hit
GTGCATAACTGGTGAG472940.12282803140641135No Hit
GTACTCAGACGAGGAT449800.11681830364655944No Hit
TCTTATGACGTGGTGA449690.11678973536420924No Hit
ACTCCGTACGAATAGT446590.11598462922524895No Hit
TAGGATAGAGGTATGG422750.10979310330498668No Hit
CAATAGAGATAACGAA403910.10490013567337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)