FastQCFastQC Report
Wed 31 May 2023
EGAF00007953624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39205524
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT1141979129.128015225609534No Hit
CCGTTGAA941274024.008708568721083No Hit
GGAAGCTC937674123.916887324347456No Hit
ATCCAAGG841760521.470456561172348No Hit
TATGCTCA551010.1405439702833713No Hit
CCGTTAAA425150.10844135127488667No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)