FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39205524
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3523830.8988095657132399No Hit
TGAGGTACTAGCCATT654290.16688719681440808No Hit
TGTGACTGACCTTTGC619750.15807721381303308No Hit
AGTGTGACTCTACTCC578230.14748686945237616No Hit
TGCAGATACTAATAGG538840.13743981587900725No Hit
TGTCTGCACATTAAGG508890.12980058626432336No Hit
TTCCCTGGAGGACCTC489500.124854854637321No Hit
TGTTACTTGTTCTGAG485930.12394426866989458No Hit
GTTAATCCTGTCCCGA482890.12316886773404688No Hit
GTGCATAACTGGTGAG478850.12213840070088083No Hit
ACTCCGTACGAATAGT451980.1152847746659374No Hit
GTACTCAGACGAGGAT450120.11481035172492529No Hit
TCTTATGACGTGGTGA449300.11460119752512425No Hit
TAGGATAGAGGTATGG429950.10966566854201464No Hit
CAATAGAGATAACGAA409030.10432968578611523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)