FastQCFastQC Report
Wed 31 May 2023
EGAF00007953628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38576657
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATGCTCT1124521829.150317509368424No Hit
CCGTTGAA921787723.894960623467192No Hit
GGAAGCTC919855323.844868154334886No Hit
ATCCAAGG829333421.498322158915947No Hit
TATGCTCA554680.14378643540833513No Hit
CCGTTAAA421890.10936406438743512No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)