FastQCFastQC Report
Wed 31 May 2023
EGAF00007953630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38576657
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3436150.8907329632010362No Hit
TGAGGTACTAGCCATT649360.16832977517984515No Hit
TGTGACTGACCTTTGC617640.16010718606332322No Hit
AGTGTGACTCTACTCC581520.15074401081462294No Hit
TGCAGATACTAATAGG541580.14039059942389515No Hit
TGTCTGCACATTAAGG504170.13069302505916985No Hit
TTCCCTGGAGGACCTC492520.12767306405010678No Hit
TGTTACTTGTTCTGAG488790.12670615807896468No Hit
GTTAATCCTGTCCCGA479450.12428500478929524No Hit
GTGCATAACTGGTGAG471410.12220084285686031No Hit
TCTTATGACGTGGTGA452470.1172911380060745No Hit
ACTCCGTACGAATAGT446630.11577726913972872No Hit
GTACTCAGACGAGGAT441380.11441634250474322No Hit
TAGGATAGAGGTATGG430080.11148710993801252No Hit
CAATAGAGATAACGAA407380.10560272239245613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)