FastQCFastQC Report
Wed 31 May 2023
EGAF00007953638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36409430
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3087170.8479039633413652No Hit
GTGCTAATGACCGTTA713710.19602339284081075No Hit
AGTGTTCGAGGGTTCC573970.15764322594448746No Hit
TCGCCGAGAAAGTAAC504520.1385684972272293No Hit
TCGGGTCGAGCCCTGA469040.12882376900709513No Hit
CACGGAAGACTCGAGC446070.12251496384315821No Hit
AGAGTAATGCGCACTG433160.11896917913848143No Hit
CACTCTGACCGCAACC376330.10336058543075242No Hit
AGGAGTTCTCGCTCGA365700.10044101212240894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)