FastQCFastQC Report
Wed 31 May 2023
EGAF00007953646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36383072
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG3300600.9071801303639231No Hit
GTGCTAATGACCGTTA709110.19490107927115116No Hit
AGTGTTCGAGGGTTCC579130.15917567378587494No Hit
TCGCCGAGAAAGTAAC504210.13858367979482325No Hit
TCGGGTCGAGCCCTGA470260.129252417168072No Hit
CACGGAAGACTCGAGC450510.12382406851186177No Hit
AGAGTAATGCGCACTG438920.12063852112323005No Hit
CACTCTGACCGCAACC380690.10463382531304669No Hit
AGGAGTTCTCGCTCGA369080.10144278086248462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)