FastQCFastQC Report
Wed 31 May 2023
EGAF00007953656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34744460
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGTACC971236427.9537054252678No Hit
GTTCACAA901036825.933250941301146No Hit
CCATGTGT899237325.881458511659122No Hit
AAGACGTG652834518.78959983836272No Hit
TGCGTACA455890.13121228535426943No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)