FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007953676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23423265
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGGTCA603926725.783198883673986No Hit
TTATTGGT587914825.099609298703662No Hit
CCGAACTC585626025.001894483967114No Hit
GGTCCAAG533278322.76703525319805No Hit
CCGAACTA249970.10671868332617165No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)