FastQCFastQC Report
Wed 31 May 2023
EGAF00007953680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007953680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57180452
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACCCA1543423526.992152842723243No Hit
GGTCGAGC1410499924.667519242415224No Hit
AAGTTGAT1407216024.610088776493058No Hit
TTAGATTG1249255021.84758875288359No Hit
CCCCCCCA2302700.4027075546727053No Hit
CCCACCAA1107610.19370430999740962No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)